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Bug #1963
closedfloating point exception in Redux when viewing stack
Status:
Closed
Priority:
Immediate
Assignee:
Amber Herold
Category:
Web interface
Target version:
Start date:
08/03/2012
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 3.0.0
Show in known bugs:
No
Workaround:
Description
When trying to view a stack, there is a floating point exception in Redux which results in a core dump. Redux server must then be restarted.
This is a URL to recreate the error:
http://cronus3.scripps.edu/betamyamiweb/processing/viewstack.php?file=/ami/data00/appion/zz07jul25b/stacks/stack86/start.hed&expId=8556&stackId=87&ps=1.63e-10
This is there error on the web page:
Warning: socket_connect(): unable to connect [111]: Connection refused in /srv/www/httpd/betamyamiweb/inc/redux.inc on line 338 Warning: socket_write(): unable to write to socket [32]: Broken pipe in /srv/www/httpd/betamyamiweb/inc/redux.inc on line 339 Warning: socket_read(): unable to read from socket [107]: Transport endpoint is not connected in /srv/www/httpd/betamyamiweb/inc/redux.inc on line 344 stack: /ami/data00/appion/zz07jul25b/stacks/stack86/start.hed
This is what is in the Redux log file:
REQUEST: pipeline=standard&filename=/ami/data00/appion/zz07jul25b/stacks/stack84/average.mrc&rgb=1&shape=150x150 &scaletype=minmax&scalemin=-3.5601949691772&scalemax=3.9171116352081&oformat=PNG NOT IN MEMORY: Format(23506896,oformat=PNG,rgb=True)NOT IN MEMORY: Scale(23504144,scalemax=2.23885393143,scalemi n=-1.98805940151,scaletype=minmax) NOT IN MEMORY: Scale(23505936,scalemax=3.91711163521,scalemin=-3.56019496918,scaletype=minmax)NOT IN MEMORY: Sha pe(23503632,shape=(150, 150)) NOT IN MEMORY: Read(23505872,filename=/ami/data00/appion/zz07jul25b/stacks/stack86/average.mrc,info=False)NOT IN MEMORY: Shape(23503760,shape=(150, 150)) NOT IN MEMORY: Read(23505808,filename=/ami/data00/appion/zz07jul25b/stacks/stack84/average.mrc,info=False)Runnin g Read(23505872,filename=/ami/data00/appion/zz07jul25b/stacks/stack86/average.mrc,info=False) Running Read(23505808,filename=/ami/data00/appion/zz07jul25b/stacks/stack84/average.mrc,info=False) Running Shape(23503632,shape=(150, 150))Running Shape(23503760,shape=(150, 150)) [1]+ Floating point exception(core dumped) nohup reduxd > /root/redux.log
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