Appion

1. Log into defcon4
2. Start python
3. import EMAN

Does EMAN need to be compiled, perhaps there is a newer?

Discovered this while centering a stack:

Center stack (redux version) has segmentation fault

[amber@defcon4 ~]$ centerParticleStack.py --stack-id=87 --mask=59 --maxshift=5 --description="center stack for redux test" --commit --rundir=/ami/data00/appion/zz07jul25b/stacks/centered87 --runname=centered87 --projectid=303 --expid=8556 --jobtype=makestack
/home/amber/workspace/myami/pyami/tifffile.py:903: UserWarning: Failed to import _tifffile.decodepackbits
  warnings.warn("Failed to import %s" % module_function)
/home/amber/workspace/myami/pyami/tifffile.py:903: UserWarning: Failed to import _tifffile.decodelzw
  warnings.warn("Failed to import %s" % module_function)

 ... Time stamp: 12aug03j59
 ... Function name: centerParticleStack
 ... Appion directory: /home/amber/workspace/myami/appion
 ... Using split database
Connected to database: 'ap303'
 ... Committing data to database
 ... Run directory: /ami/data00/appion/zz07jul25b/stacks/centered87
 ... Writing function log to: centerParticleStack.log
 ... Running on host: defcon4
 ... Uploading ScriptData....
 ... Running on host: defcon4
 ... Found 4 processors on this machine
 ... Running on host: defcon4
 ... Running Appion version 'trunk-r16801:17002M'
 ... Getting stack data for stackid=87
Old stack info: 'test redux'
Segmentation fault (core dumped)

This runs on non-redux code with CentOS 5 fine.