Feature #1996
open
Added by Amber Herold over 12 years ago.
Updated over 11 years ago.
Description
Adding Craigs masking tool to the appion pipeline.
Hi Craig,
I'd like to complete the Maskiton integration with Appion. I know there are some technical hurdles to a complete integration, but can you tell me if there is anything that can be done that still needs to be done?
Is there some way to access the results to pull them into appion?
Also, it would be great to have some text to add to the help page for Maskiton. Is there anything available?
Thanks.
Talked with Dipa to see how to use maskiton now. Removed code to select a stack. Users need to upload a stack to the maskiton server themselves using the maskiton interface.
But can we make an aligned stack in Appion? I.e. can we select a class and request that an aligned stack be generated form that class? Otherwise what stack do you hand to Maskiton?
I'll add making a stack of aligned particles to the todo list.
In the meantime, Dipa aand Dmitry, could you edit the maskiton help page (http://emg.nysbc.org/projects/appion/wiki/Maskiton)
to include the process for setting up everything to launch maskiton, even if there are steps that happen outside of appion (Spider, photoshop, anything else?)?
- Target version changed from Appion/Leginon 3.0.0 to Appion/Leginon Future Version
We will release 3.0 without the ability to make a stack of aligned particles. Moving this to future version.
Also available in: Atom
PDF