Bug #2257
closedcan not run Xmipp Reference Based Maximum Likelihood Alignment on emportal
0%
Description
Hi
I am using goby - emportal.scripps.edu/ to process my data.
After generating a few classes using Xmipp Maximum Likelihood Alignment (reference free) and creating templates, I tried to run Xmipp Reference Based Maximum Likelihood Alignment. It shows as a running job for a second and then quits.
I've tried a few times and the output is the same altering the number of classes. Below is the message.
Thanks a lot
I get the following messages in the mail
Message 5:
From adm@goby.amigroup.scripps.edu Tue Feb 19 13:48:05 2013
Date: Tue, 19 Feb 2013 13:48:05 -0800
From: adm <adm@goby.amigroup.scripps.edu>
To: jpluciano@goby.amigroup.scripps.edu
Subject: PBS JOB 23936.goby.amigroup.scripps.edu
Precedence: bulk
PBS Job Id: 23936.goby.amigroup.scripps.edu
Job Name: right_reference_alignmen3.appionsub.job
Exec host: node01/11+node01/10+node01/9+node01/8
Execution terminated
Exit_status=0
resources_used.cput=00:00:00
resources_used.mem=0kb
resources_used.vmem=0kb
resources_used.walltime=00:00:18
&
Message 6:
From adm@goby.amigroup.scripps.edu Tue Feb 19 13:48:09 2013
Date: Tue, 19 Feb 2013 13:48:09 -0800
From: adm <adm@goby.amigroup.scripps.edu>
To: jpluciano@goby.amigroup.scripps.edu
Subject: PBS JOB 23936.goby.amigroup.scripps.edu
Precedence: bulk
PBS Job Id: 23936.goby.amigroup.scripps.edu
Job Name: right_reference_alignmen3.appionsub.job
Exec host: node01/11+node01/10+node01/9+node01/8
An error has occurred processing your job, see below.
Post job file processing error; job 23936.goby.amigroup.scripps.edu on host node01/11+node01/10+node01/9+node01/8
Unable to copy file /var/spool/torque/spool/23936.goby.amigroup.scripps.edu.OU to jpluciano@goby.amigroup.scripps.edu:/ami/exdata/appion/12dec05b/align/right_reference_alignmen3/right_reference_alignmen3.appionsub.job.o23936
error from copy
Permission denied (publickey,gssapi-with-mic,password).
lost connection
end error output
Output retained on that host in: /var/spool/torque/undelivered/23936.goby.amigroup.scripps.edu.OU