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Bug #2333

closed

spider reference based alignement not working anymore in appion

Added by Melody Campbell almost 12 years ago. Updated almost 12 years ago.

Status:
Closed
Priority:
Normal
Assignee:
-
Category:
-
Target version:
-
Start date:
04/19/2013
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

it was working fine yesterday, now get appion error saying "no error code set by the system"
don't work on cronus3 or longboard

command generated:
/opt/myamisnap/bin/appion runJob.py /opt/myamisnap/bin/appion refBasedAlignment2.py --projectid=368 --template-list=239,238,237,236,235,234,233,232,231,230,229,228,227,226,225,224,223,222,221,220,219 --runname=refbased-21hp-bin4 --stack=72 --last-ring=19 --first-ring=2 --rundir=/ami/data15/appion/13mar09f/align/refbased-21hp-bin4 --description="try with correct binning 19-2-3" --lowpass=15 --highpass=2000 --xy-search=3 --xy-step=1 --num-iter=3 --num-part=30855 --bin=4 --csym=1 --commit --expid=11349 --jobtype=partalign --ppn=1 --nodes=1 --walltime=240 --jobid=879

won't work if posted into a terminal, also won't work if runJob.py parts taken out.

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