Leginon

More elaboration: I think my compustage cripps from time to time. While moving, the motor might miss one stroke and the image jerks once then move on. The consequence is there is large systematic error out of it. When I recall the saved positions, it won't go back to the same place at all. I tested compustage with reproducibility run. When it works, it quite accurate. When it is bad, it can be as bad as 10um plus.

Lowest sq is 1700X 20um FOV, hl is 6500X 5um FOV. Manual navigation in sg and hl preset works perfect. I used all parent images for focus node, however Adjustment node only calculates the transform based on parent image and only move once without further correlation. Due to the large systematic error occurred before, it will end up complete different places for hl images. So my targets on lacey carbon in that hl image are completely missed (see attached example). But the leginon somehow goes on and take exposure on wrong places.

The Navigator option in focus seems only effect for taking final images. I wish it also works for initial hl target centering as well. It will useful to deal with errorneous compustage I have now. I will have FEI engineer to check on it, but I won't bet on them.