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Feature #2843

closed

Add a gui for uploadExternalRefine.py

Added by Amber Herold over 10 years ago. Updated about 10 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Amber Herold
Category:
Web interface
Target version:
Start date:
07/15/2014
Due date:
% Done:

0%

Estimated time:

Description

Adding under import section of pipeline.
See http://emg.nysbc.org/projects/appion/wiki/Upload_Refinement
for info on using the script.


Related issues 1 (1 open0 closed)

Related to Appion - Bug #2939: Appion Developers Conference Call NotesNew09/24/2014

Actions
Actions #1

Updated by Amber Herold about 10 years ago

  • Status changed from Assigned to In Code Review
  • Assignee changed from Amber Herold to Anchi Cheng
Actions #2

Updated by Anchi Cheng about 10 years ago

just one question

line 34 of uploadExternalRefine.inc defines OutputDIrectory as 'recon/external_package_test'. Is that intended ? Otherwise, it is fine. You can assign someone to test once you consider that. I am o.k. if that is the way you think it should be.

Actions #3

Updated by Anchi Cheng about 10 years ago

  • Assignee changed from Anchi Cheng to Amber Herold
Actions #4

Updated by Amber Herold about 10 years ago

  • Assignee changed from Amber Herold to Anchi Cheng

Good catch Anchi.
Yes it is not an ideal name. I was following Dmitry's instructions found here:
http://emg.nysbc.org/projects/appion/wiki/Upload_Refinement

The name of the file MUST be changed to match what the user has setup, and I thought it would be easier to understand what that path corresponds to if it matched the documentation, but I'm open to other suggestions.

Any ideas?

Actions #5

Updated by Anchi Cheng about 10 years ago

  • Assignee changed from Anchi Cheng to Amber Herold

Since it is at the place of runname, why not call it "uploadrun1" as an example.

Actions #6

Updated by Clint Potter about 10 years ago

  • Status changed from In Code Review to Closed

Discussed during appion conference call. Believe this is good enough. Every Euler angle may not be correct. Close the issue for now.

Actions #7

Updated by Neil Voss about 10 years ago

  • Related to Bug #2939: Appion Developers Conference Call Notes added
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