Feature #2
closed
Get FREALIGN integrated into appion
Added by Neil Voss almost 15 years ago.
Updated over 13 years ago.
Description
There are numerous steps to get this working the major ones are:
- rebuild a EMAN reconstructed stack into a FREALIGN not CTF-corrected stack with black particles
- install FREALIGN on garibaldi and get it working
- upload the FREALIGN results into the database
It would be nice to have this working before Cathy Lawson visits (Feb 8).
- % Done changed from 0 to 20
In relation to 'rebuild a EMAN reconstructed stack into a FREALIGN not CTF-corrected stack with black particles',
Changed makestack2.py to take a stack id instead of a particle selection id, r4049.
Still need to update appionweb to use this feature.
- Priority changed from High to Normal
- Priority changed from Normal to High
- Tracker changed from Bug to Feature
- % Done changed from 20 to 40
- % Done changed from 40 to 100
- Target version set to Appion/Leginon 2.0.0
- Status changed from Assigned to In Code Review
- Assignee changed from Neil Voss to Amber Herold
- Priority changed from High to Normal
FREALIGN is finally implemented! Instead of posting revisions for code reivew, I suggest that the entire programs get reviewed it will be easier.
source:trunk/appion/bin/prepFrealign.py
source:trunk/appion/bin/uploadFrealign.py
source:trunk/myamiweb/processing/prepareFrealign.php
source:trunk/myamiweb/processing/runFrealign.php
source:trunk/myamiweb/processing/uploadFrealign.php
- Target version changed from Appion/Leginon 2.0.0 to Appion/Leginon 2.0.1
Will review and test this after 2.0 release
- Status changed from In Code Review to In Test
- Status changed from In Test to Closed
The frealign recon code has been refactored. See #1324.
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