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Bug #335

closed

Hide incomplete feature GUI controls

Added by Amber Herold over 14 years ago. Updated over 14 years ago.

Status:
Closed
Priority:
High
Assignee:
Pick-Wei Lau
Category:
-
Target version:
Appion/Leginon 2.0.0
Start date:
04/08/2010
Due date:
04/16/2010
% Done:

100%

Estimated time:
Spent time:
1.00 h
Affected Version:
Appion/Leginon 2.0.1
Show in known bugs:
Workaround:

Description

Neil knows of some features that are not fully implemented that should be hidden for Appion 2.0.

Related issues 1 (0 open — 1 closed)

Related to Appion - Feature #2265: Unhide iterative msa/mra alignmentClosedAnchi Cheng02/27/2013

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 #1

Updated by Neil Voss over 14 years ago

Links to broken features reside in the inc/menuprocessing.php, selectFeatureAnalysis.php, and selectParticleAlignment.php

selectParticleAlignment.php:

IMAGIC Multi Reference Alignment (requires IMAGIC and the template stack thing, below)
CAN Reference-free alignment (runs but does not upload results)

selectFeatureAnalysis.php:

Cluster by Affinity Propagation (works but broken on large stacks)
IMAGIC Multivariate Statistical Analysis (dependent on IMAGIC version)

inc/menuprocessing.php: CTF Estimation

CtfTilt Estimation (works and uploads, but fails alot; there is a warning)

inc/menuprocessing.php: Particle Alignment

Template Stacks (this is Dmitry's thing)

inc/menuprocessing.php: Refine Reconstruction
See Refinement_Package_Status

Frealign Refinement (almost)
SPIDER Refinement (broken)
Xmipp Refinement (broken)
IMAGIC Refinement (broken)

inc/menuprocessing.php: Tomography
  • see Anchi

inc/menuprocessing.php: Region Mask Creation
Does any of this work? Anchi may know.

Crud Finding
Manual Masking

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 #2

Updated by Neil Voss over 14 years ago

Eric has added the INFUTURE option to the wizard/

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 #3

Updated by Neil Voss over 14 years ago

  • % Done changed from 0 to 10
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 #4

Updated by Amber Herold over 14 years ago

  • Assignee set to Amber Herold
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 #5

Updated by Amber Herold over 14 years ago

  • Status changed from New to In Code Review
  • Assignee changed from Amber Herold to Anchi Cheng

Used HIDE_FEATURE in config.php to hide menu listings of incomplete features in prep for Appion 2.0 release. To use the features indicated in this issue, you must set HIDE_FEATURE to false.
All features mentioned above were hidden with the exception of tomography and Manual Masking.

To test: The NRAMM - test project will include most of the features. Set the HIDE_FEATURE flag to both true and false to ensure features behave properly in both cases.

r13674

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 #6

Updated by Amber Herold over 14 years ago

  • % Done changed from 10 to 100
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 #7

Updated by Anchi Cheng over 14 years ago

  • Status changed from In Code Review to In Test
  • Assignee changed from Anchi Cheng to Pick-Wei Lau
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 #8

Updated by Amber Herold over 14 years ago

  • Status changed from In Test to Closed
  • Affected Version set to Appion/Leginon 2.0.1

Anchi tested

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