Bug #3656: prepRefineFrealign.py does not convert stack properly - TiltPicker - Electron Microscopy Group

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Bug #3656

open

prepRefineFrealign.py does not convert stack properly

Added by Anchi Cheng about 9 years ago. Updated about 9 years ago.

Status:

New

Priority:

Normal

Assignee:

Target version:

Start date:

10/13/2015

Due date:

% Done:

Estimated time:

Description

Traceback (most recent call last):
  File "/opt/myamisnap/bin/prepRefineFrealign.py", line 247, in <module>
    app.start()
  File "/opt/myamisnap/lib/appionlib/apPrepRefine.py", line 420, in start
    self.__processStack(prepdata)
  File "/opt/myamisnap/lib/appionlib/apPrepRefine.py", line 363, in __processStack
    self.convertToRefineStack()
  File "/opt/myamisnap/bin/prepRefineFrealign.py", line 189, in convertToRefineStack
    xmipp_normtext = self.setArgText('xmipp-normalize',(paramdata['xmipp-norm'],),True)
  File "/opt/myamisnap/lib/sinedon/data.py", line 517, in __getitem__
    return self.special_getitem(key, dereference=True)
  File "/opt/myamisnap/lib/sinedon/data.py", line 496, in special_getitem
    value = super(Data, self).__getitem__(key)
KeyError: 'xmipp-norm'

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