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Bug #3851

open

uplodaded maxlikeruns may have wrong references in the database

Added by Anchi Cheng almost 9 years ago. Updated over 7 years ago.

Status:
Assigned
Priority:
Urgent
Assignee:
Anchi Cheng
Category:
-
Target version:
-
Start date:
12/23/2015
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

See ApAlignReferences for a given alignstack Noticed a mismatch in the reference stack view and number of reference shown in summary table.

Related issues 2 (1 open — 1 closed)

Related to Appion - Bug #4396: Relion 2d alignment fails on upload with empty classesClosedNeil Voss08/18/2016

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Related to Appion - Bug #4566: Relion 2D tool in appion uploads wrong resultsIn Code Review11/04/2016

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 #1

Updated by Anchi Cheng almost 9 years ago

  • Status changed from New to Assigned
  • Priority changed from Normal to Urgent

Can see that in ny_ap33 ApAlignREferenceData for alignrun 2 where refnum 3 and 37 both point mrcfile to part15jun21u31_ref000037.mrc. If there are more particle insertions, they will insert new row of data.

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 #2

Updated by Anchi Cheng over 7 years ago

  • Assignee changed from Anchi Cheng to Neil Voss

Neil,

This may be related to the empty class problem people are having with Relion

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 #3

Updated by Neil Voss over 7 years ago

  • Related to Bug #4396: Relion 2d alignment fails on upload with empty classes added
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 #4

Updated by Neil Voss over 7 years ago

  • Related to Bug #4566: Relion 2D tool in appion uploads wrong results added
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 #5

Updated by Neil Voss over 7 years ago

  • Assignee changed from Neil Voss to Anchi Cheng

I am unable to reproduce this error. The empty classes are coming directly from the Relion star file, so maybe we could change an input parameter, but the problem is coming from Relion.

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