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Feature #3922
closedFrealign 9 with Appion
Status:
Won't Fix or Won't Do
Priority:
Normal
Assignee:
Category:
Web interface
Target version:
Start date:
01/31/2016
Due date:
% Done:
0%
Estimated time:
Description
Dear Anchi,
The Frealign app in Appion is quite good and goes almost all the way to getting the Frealign run ready, except for a few bits. Directory of the run is here: /gpfs/appion/yztan/15sep14b/recon/frealign_recon5/
1) Converting the parameter file in the directory for Frealign9 format using
python -c 'from appionlib import apFrealign ; apFrealign.frealign8_to_frealign9("params.000.par", "output.par", apix of the stack used for Xmipp refinement, occ=100)'
2) Running Frealign9
The Frealign8 refinement did not run, probably because it was not installed as a module in the SEMC cluster
Thank you!
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