Project

General

Profile

Actions
Copy link

Bug #4055

closed

eman whole image phase flipping does not take non-square image

Added by Zhening Zhang over 8 years ago. Updated almost 7 years ago.

Status:
Won't Fix or Won't Do
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
Appion/Leginon 3.3
Start date:
03/23/2016
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.2.0
Show in known bugs:
Yes
Workaround:

Description

Session id: 16mar07f run name: stack4.appionsub.job

Traceback (most recent call last):
File "/opt/myamisnap/bin/makestack2.py", line 1213, in
makeStack.run()
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 87, in run
results = self.loopProcessImage(imgdata)
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 137, in loopProcessImage
return self.processImage(imgdata)
File "/opt/myamisnap/lib/appionlib/apParticleExtractor.py", line 510, in processImage
total_processed_particles = self.processParticles(imgdata,partdatas,shiftdata)
File "/opt/myamisnap/bin/makestack2.py", line 76, in processParticles
self.boxedpartdatas, self.imgstackfile, self.partmeantree = self.boxParticlesFromImage(imgdata, partdatas,
shiftdata)
File "/opt/myamisnap/bin/makestack2.py", line 234, in boxParticlesFromImage
partmeantree = self.calculateParticleStackStats(imgstackfile, boxedpartdatas)
File "/opt/myamisnap/bin/makestack2.py", line 303, in calculateParticleStackStats
apDisplay.printError("Standard deviation for particle d in image %s"(i,self.shortname))
File "/opt/myamisnap/lib/appionlib/apDisplay.py", line 65, in printError
raise Exception, colorString("\n * FATAL ERROR *\n"+text+"\n\a","red")
Exception:
  • FATAL ERROR ***
    Standard deviation for particle in image 16mar07f_Ribosome_manual_024gr_01sq_02hl_03en-a
Actions
Copy link

Also available in: Atom PDF