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Bug #4190

closed

DogPicker has two maxsize flags

Added by Yong Zi Tan over 8 years ago. Updated over 7 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Yong Zi Tan
Category:
-
Target version:
Start date:
05/19/2016
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.3
Show in known bugs:
No
Workaround:

Description

Dear all,

The new DogPicker generates an additional --maxsize flag, thus creating an error when running it. Removal of the tag solves the problem.

/opt/myamisnap/bin/appion dogPicker.py --kfactor=1.2 --runname=dogrun1 --rundir=/gpfs/appion/yztan/16may15a/extract/dogrun1 --commit --preset=enn-a --projectid=211 --session=16may15a --no-rejects --no-wait --continue --pdiam=80 --lpval=10 --hpval=0 --medianval=2 --pixlimit=4 --binval=4 --planereg --invert --minthresh=0.4 --maxthresh=1.5 --maxpeaks=1500 --peaktype=centerofmass --maxsize=1.2 --overlapmult=1.5 --maxsize=1.2 --expid=2119 --jobtype=dogpicker

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