Appion

Appion command and the error log is at /gpfs/appion/jbrasch/16may20b/extract/tmplrun20

[root@SEMC-head tmplrun20]# more tmplrun20.appionsub.log
 ... Time stamp: 16may24s57
 ... Function name: templateCorrelator
 ... Appion directory: /opt/myamisnap/lib
 ... Processing hostname: node11

Traceback (most recent call last):
  File "/opt/myamisnap/bin/templateCorrelator.py", line 7, in <module>
    imgLoop = apTemplateCorrelator.TemplateCorrelationLoop()
  File "/opt/myamisnap/lib/appionlib/particleLoop2.py", line 92, in __init__
    appionLoop2.AppionLoop.__init__(self)
  File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 27, in __init__
    appionScript.AppionScript.__init__(self)
  File "/opt/myamisnap/lib/appionlib/appionScript.py", line 67, in __init__
    self.setParams(optargs,useglobalparams)
  File "/opt/myamisnap/lib/appionlib/appionScript.py", line 341, in setParams
    self.params = apParam.convertParserToParams(self.parser)
  File "/opt/myamisnap/lib/appionlib/apParam.py", line 374, in convertParserToParams
    apDisplay.printError("Unknown commandline options: "+str(args))
  File "/opt/myamisnap/lib/appionlib/apDisplay.py", line 65, in printError
    raise Exception, colorString("\n *** FATAL ERROR ***\n"+text+"\n\a","red")
Exception:
 *** FATAL ERROR ***
Unknown commandline options: ['0', '0strt=0', '0end=360', '0incr=10', '1', '1strt=0', '1end=360', '1incr=10', '2',
'2strt=0', '2end=360', '2incr=10', '3', '3strt=0', '3end=360', '3incr=10', '4', '4strt=0', '4end=360', '4incr=5', '
5', '5strt=0', '5end=360', '5incr=10', '6', '6strt=0', '6end=360', '6incr=10', '7', '7strt=0', '7end=360', '7incr=1
0', '8', '8strt=0', '8end=360', '8incr=10', '9', '9strt=0', '9end=360', '9incr=10', '1', '1strt=0', '1end=360', '1i
ncr=10', '2', '2strt=0', '2end=360', '2incr=10', '3', '3strt=0', '3end=360', '3incr=10', '4', '4strt=0', '4end=360'
, '4incr=10', '5', '5strt=0', '5end=360', '5incr=10', '6', '6strt=0', '6end=360', '6incr=10', '7', '7strt=0', '7end
=360', '7incr=10', '8', '8strt=0', '8end=360', '8incr=10', '9', '9strt=0', '9end=360', '9incr=10', '0', '0strt=0',
'0end=360', '0incr=10', '1', '1strt=0', '1end=360', '1incr=10', '2', '2strt=0', '2end=360', '2incr=10', '--expid=21
48']

It is a parsing error in runAppionLoop when there are more than 9 template chosen. Can use the old interface by replacing the url where it says runAppionLoop.php with runTemplateCorrelator.php to use the old one.

Fixed in r19828 and merged into beta. The problem is in removing the commands generated for the template selections. It searches for "template1" so it picked up both 10 and 1 but only clean up the former partially. Reversed the order of iteration fixes the problem.

Julia, it should be fine once the change takes effect tomorrow.