Actions
Support #4215
openStack making
Status:
New
Priority:
Normal
Assignee:
-
Category:
-
Target version:
-
Start date:
05/26/2016
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 3.2
Description
Trying to make a stack and end up with this error. This is project:
http://192.168.4.37/betamyamiweb/processing/checkAppionJob.php?expId=1909&jobId=619
!!! DEBUG: printSummary set local count to stats totalcount=59
SUMMARY: makestack2
------------------------------------------
TIME: 51.63 msec
AVG TIME: 51.11 /- 7.03 msec
!!! DEBUG: printSummary adding to stats count
------------------------------------------
!!! WARNING: skipped total of 857 images.
... to process them again, remove 'continue' option and run makestack2 again.
!!! WARNING: files with the patterns '/gpfs/appion/bcarr/16apr10a/stacks/stack18/16apr10a*.dwn.mrc'
will be removed
... Removed of files
!!! WARNING: files with the patterns '/gpfs/appion/bcarr/16apr10a/stacks/stack18/16apr10a*m
... .mrc' will be removed
... Removed of files
... averaging stack for summary web page
!!! WARNING: could not create stack average, average.mrc
... creating Stack Mean Plot montage for stackid: 64
... Getting stack data for stackid=64
Old stack info: 'CTF conf. < 8.0'
... binning stack by 1
... possible virtual stack, searching for original stack
... Querying original particles from stackid=64
Traceback (most recent call last):
File "/opt/myamisnap/bin/makestack2.py", line 1216, in
makeStack.run()
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 114, in run
self.postLoopFunctions()
File "/opt/myamisnap/bin/makestack2.py", line 1145, in postLoopFunctions
apStackMeanPlot.makeStackMeanPlot(stackid)
File "/opt/myamisnap/lib/appionlib/apStackMeanPlot.py", line 37, in makeStackMeanPlot
vstackdata = apStack.getVirtualStackParticlesFromId(stackid)
File "/opt/myamisnap/lib/appionlib/apStack.py", line 87, in getVirtualStackParticlesFromId
apDisplay.printError("Virtual stack: %i does not have original stack information")
File "/opt/myamisnap/lib/appionlib/apDisplay.py", line 65, in printError
raise Exception, colorString("\n * FATAL ERROR *\n"+text"\n\a","red")
Exception:
- FATAL ERROR ***
Virtual stack: %i does not have original stack information
Updated by Bridget Carragher over 8 years ago
OK, I think I might have messed up by choosing the wrong template run. I am trying again now. Perhaps the error comes up when you have no particles in the stack? This is confusing and maybe just need to prevent the virtual stack making thing from operating on an empty stack. A better error would be : you have no particles in this stack as that would alert the user to the issue.
Actions