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Bug #4229

closed

Relion 2d class average upload errror

Added by Bridget Carragher over 8 years ago. Updated about 8 years ago.

Status:
Won't Fix or Won't Do
Priority:
Normal
Assignee:
-
Category:
-
Target version:
-
Start date:
05/30/2016
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

When trying to upload Relion class average run to database (see: http://192.168.4.37/betamyamiweb/processing/runUploadMaxLike.php?expId=2177&maxlikeid=91)

I get a "mirror error"

[bcarr@SEMC-head spotiton]$ /opt/myamisnap/bin/appion uploadMaxlikeAlignment.py --rundir=/gpfs/appion/bcarr/16may27g/align/rmaxlike4 -t 16may29p01 --commit --projectid=63 --runname=91 --expid=2177 --jobtype=partalign

... Time stamp: 16may30l23
 ... Function name: uploadMaxlikeAlignment
 ... Appion directory: /opt/myamisnap/lib
 ... Processing hostname: SEMC-head
 ... Using split database
Connected to database: 'nyap_63'
 ... Committing data to database
 ... Run directory: /gpfs/appion/bcarr/16may27g/align/rmaxlike4
!!! WARNING: directory '/gpfs/appion/bcarr/16may27g/align/rmaxlike4' already exists.
 ... Writing function log to: uploadMaxlikeAlignment.log
 ... Uploading ScriptData....
 ... Found 24 processors on this machine
 ... Running Appion version 'myami-3.2'
Traceback (most recent call last):
  File "/opt/myamisnap/bin/uploadMaxlikeAlignment.py", line 639, in <module>
    maxLike.start()
  File "/opt/myamisnap/bin/uploadMaxlikeAlignment.py", line 606, in start
    self.alignReferences(runparams)
  File "/opt/myamisnap/bin/uploadMaxlikeAlignment.py", line 485, in alignReferences
    if runparams['mirror'] is True:
KeyError: 'mirror'
[bcarr@SEMC-head spotiton]$
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