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Bug #4437

closed

ctftilt not working

Added by Zhening Zhang about 8 years ago. Updated about 8 years ago.

Status:
Duplicate
Priority:
Urgent
Assignee:
Category:
-
Target version:
-
Start date:
09/10/2016
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

here is the error msg:
Beginning Main Loop
!!! DEBUG: _startLoop imagecount=48, count=0
... Pixel size: 1.09699
!!! WARNING: overriding CTF value with user nominal value 20000.0 A

... Xmag=45579, dstep=5.00e-06, mpix=1.10e-10
!!! WARNING: Defocus minimum is less than zero
Defocus search range: 1000 A to 45000 A (0.10 to 4.50 um)
... running ctf estimation at Sat Sep 10 14:59:13 2016
/usr/local/bin/ctftilt64.exe
16sep10a_032sq_01hln_02enn-a.mrc
16sep10a_032sq_01hln_02enn-a-pow.mrc
2.7,300.0,0.07,45579.2669031,5.0,2
512,100.0,10.0,1000.0,45000.0,1000.0,500.0,-49.9953748976,10
... ctf estimation completed in 3.31 sec
Traceback (most recent call last):
File "/opt/myamisnap/bin/ctfestimate.py", line 457, in
imgLoop.run()
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 88, in run
results = self.loopProcessImage(imgdata)
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 146, in loopProcessImage
return self.processImage(imgdata)
File "/opt/myamisnap/bin/ctfestimate.py", line 327, in processImage
( nominaldf, self.ctfvalues['defocusinit']))
KeyError: 'defocusinit'


Related issues 1 (0 open1 closed)

Is duplicate of Appion - Bug #3550: CTFFIND failing for some micrographsClosedDmitry Lyumkis09/12/2015

Actions
Actions #1

Updated by Anchi Cheng about 8 years ago

  • Related to Bug #3550: CTFFIND failing for some micrographs added
Actions #2

Updated by Anchi Cheng about 8 years ago

  • Related to deleted (Bug #3550: CTFFIND failing for some micrographs)
Actions #3

Updated by Anchi Cheng about 8 years ago

  • Is duplicate of Bug #3550: CTFFIND failing for some micrographs added
Actions #4

Updated by Anchi Cheng about 8 years ago

  • Status changed from New to Duplicate
  • Assignee set to Zhening Zhang

Please change boxsize from 512 to 256. The known workaround to ctftilt bug.

Actions #5

Updated by Zhening Zhang about 8 years ago

I changed boxsize to 256. It is still not work.

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