Project

General

Profile

Actions

Bug #449

closed

updateAppionDB does not always work

Added by Dmitry Lyumkis over 14 years ago. Updated over 14 years ago.

Status:
Closed
Priority:
Low
Assignee:
Amber Herold
Category:
-
Target version:
-
Start date:
05/11/2010
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.0.1
Show in known bugs:
Workaround:

Description

found when checking emanjobgen.php. The database does not always get updated if you kill a job. There a script called updateAppionDB.py, which is run at the end of each job file, which sets the database to "D" for "done," "R," for "running," etc. If the job is killed from the terminal, for example, the database does not get updated.


Related issues 2 (0 open2 closed)

Related to Appion - Bug #534: Jobs show as qeued instead of runningClosed05/21/2010

Actions
Related to Appion - Bug #1087: Difficult to tell when a Guppy job is queued, running or stalled/dead. ClosedAmber Herold12/14/2010

Actions
Actions #1

Updated by Eric Hou over 14 years ago

  • Assignee set to Eric Hou
Actions #2

Updated by Neil Voss over 14 years ago

  • Status changed from New to Assigned
  • Target version set to Appion/Leginon 2.0.0

The user should kill the job from the webpage. I am willing to put this bug in the won't fix category.

Actions #3

Updated by Amber Herold over 14 years ago

  • Target version changed from Appion/Leginon 2.0.0 to Appion/Leginon 2.0.1
Actions #4

Updated by Neil Voss over 14 years ago

  • Status changed from Assigned to In Test
  • Assignee changed from Eric Hou to Dmitry Lyumkis

usr_object does not have permission to update the database change ALL your sinedon.cfg (home, guppy, garibaldi) to use ami_object

Actions #5

Updated by Amber Herold over 14 years ago

  • Target version deleted (Appion/Leginon 2.0.1)
  • Affected Version set to Appion/Leginon 2.0.1
Actions #6

Updated by Dmitry Lyumkis over 14 years ago

  • Status changed from In Test to Merge
  • Assignee changed from Dmitry Lyumkis to Amber Herold

i guess jobs should be killed from the webpage, and if the user wants to manually go in and kill it from the terminal, then that person is responsible for running their own updateAppionDB.py script to update the database. I put this into the Appion documentation (http://emg.nysbc.org/projects/appion/wiki/Common_Workflow).

Actions #7

Updated by Amber Herold over 14 years ago

  • Status changed from Merge to Closed
Actions

Also available in: Atom PDF