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Bug #4491

closed

CTFTILT doesn't work - phase shift error

Added by Yacob Gomez-Llorente about 8 years ago. Updated about 8 years ago.

Status:
Closed
Priority:
Urgent
Assignee:
-
Category:
-
Target version:
-
Start date:
10/01/2016
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

It just doesn't work.
Check the run /gpfs/appion/ygomez/16sep28e/ctf/ctftiltrun4.
Maybe I am doing something wrong, but I don't think so, it just doesn't run even for the first micrograph.
It gives me an error that I think it is associated to the phase plates. But I am not using phase plates:

Traceback (most recent call last):
File "/emg/sw/packages/myamisnap/appion/bin/ctfestimate.py", line 465, in <module>
imgLoop.run()
File "/emg/sw/packages/myamisnap/appion/appionlib/appionLoop2.py", line 95, in run
self.loopCommitToDatabase(imgdata)
File "/emg/sw/packages/myamisnap/appion/appionlib/appionLoop2.py", line 153, in loopCommitToDatabase
return self.commitToDatabase(imgdata)
File "/emg/sw/packages/myamisnap/appion/bin/ctfestimate.py", line 367, in commitToDatabase
ctfinsert.validateAndInsertCTFData(imgdata, self.ctfvalues, self.ctfrun, self.params['rundir'])
File "/emg/sw/packages/myamisnap/appion/appionlib/apCtf/ctfinsert.py", line 43, in validateAndInsertCTFData
ctfvalues = runCTFdisplayTools(imgdata, ctfvalues, opimagedir, fftpath, fftfreq)
File "/emg/sw/packages/myamisnap/appion/appionlib/apCtf/ctfinsert.py", line 83, in runCTFdisplayTools
ctfdisplaydict = ctfdisplay.makeCtfImages(imgdata, ctfvalues, fftpath, fftfreq)
File "/emg/sw/packages/myamisnap/appion/appionlib/apCtf/ctfdisplay.py", line 1131, in makeCtfImages
ctfdisplaydict = a.CTFpowerspec(imgdata, ctfdata, fftpath, fftfreq, twod=twod)
File "/emg/sw/packages/myamisnap/appion/appionlib/apCtf/ctfdisplay.py", line 969, in CTFpowerspec
self.extra_phase_shift = to_float(ctfdata['extra_phase_shift'])
KeyError: 'extra_phase_shift'

Actions #1

Updated by Yacob Gomez-Llorente about 8 years ago

  • Status changed from New to Closed

Nevermind, now it is working :D

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