Appion

Affected files are all files the use apChimera.renderSnapshots() or apChimera.filterAndChimera(), this list is:

./bin/createModel.py
./bin/imagic3d0.py
./bin/imagic3dRefine.py
./bin/makeSnapshot.py
./bin/modelFromEMDB.py
./bin/modelFromPDB.py
./bin/otrVolume.py
./bin/rctVolume.py
./bin/spiderRecon-PWL.py
./bin/uploadModel.py

./bin/makegoodaverages.py
./bin/postProc.py
./bin/uploadXmippRefine.py
./lib/apRecon.py

Then the webpages need to be updataed, especially, summarytables.inc and the following:

reconreport.php
otrreport.php
rctreport.php
densityreport.php

Chimera 1.2509 does not have the 'fly' command which makes movie making hard.