Feature #4849
openIs uploadRelionRefine.py implemented?
0%
Description
Am trying to modify it to an uploadCryoSparc.py, but am not sure of the status. In any case, it is in the trunk.
Updated by Neil Voss over 7 years ago
myami/appion/bin/uploadRelionRefine.py
works for me, but I doubt many people use it.
Updated by Philip Baldwin over 7 years ago
Hi Neil,
Thanks for answering. What button on the left side bar does it correspond to? Is there an uploadCRelionRefine.php that creates the command
involving u?
Can you give me an example usage of uploadRelionRefine.py along with params?
I don't happen to see a Relion section on the uploadrecon.php interface.Thank you in advance, PhilUpdated by Neil Voss over 7 years ago
- Related to Feature #2044: Add Relion single model refinement to appion pipeline added
Updated by Neil Voss over 7 years ago
- Assignee changed from Neil Voss to Philip Baldwin
I have not used it in a while, so it would take awhile to figure out again, but it was designed to figure out most everything if you ran it from the Relion refinement folder. See #2044 for any documentation.
Updated by Neil Voss over 7 years ago
Oh, I did not create a web launcher for it. We never figured that part out.
Updated by Philip Baldwin over 7 years ago
The web launcher is the easy part isn't it? The uploadRelionRefine.py command is a lot longer than the launcher would be.
Thank you, Philip
Hi Neil,
Do you mind if I do a rewrite? Most of Amber's starFile.py should be supplanted by pandas dataframe shouldn't it? It is a standardized spreadsheet reader/writer.
Sincerely, Philip
Updated by Philip Baldwin over 7 years ago
- Assignee changed from Philip Baldwin to Neil Voss
Updated by Neil Voss over 7 years ago
I am not a big fan of the pandas software, frankly I have never used it. I thought it was for visualization of data rather than input/output. If you think it would be better or faster go ahead, but I was fine with how amber did the starFile.py