Feature #4849
open
Is uploadRelionRefine.py implemented?
Added by Philip Baldwin over 7 years ago.
Updated over 7 years ago.
Description
Am trying to modify it to an uploadCryoSparc.py, but am not sure of the status. In any case, it is in the trunk.
myami/appion/bin/uploadRelionRefine.py
works for me, but I doubt many people use it.
Hi Neil,
Thanks for answering. What button on the left side bar does it correspond to? Is there an uploadCRelionRefine.php that creates the command
involving u?
Can you give me an example usage of uploadRelionRefine.py along with params?
I don't happen to see a Relion section on the uploadrecon.php interface.
Thank you in advance, Phil
- Related to Feature #2044: Add Relion single model refinement to appion pipeline added
- Assignee changed from Neil Voss to Philip Baldwin
I have not used it in a while, so it would take awhile to figure out again, but it was designed to figure out most everything if you ran it from the Relion refinement folder. See #2044 for any documentation.
Oh, I did not create a web launcher for it. We never figured that part out.
The web launcher is the easy part isn't it? The uploadRelionRefine.py command is a lot longer than the launcher would be.
Thank you, Philip
Hi Neil,
Do you mind if I do a rewrite? Most of Amber's starFile.py should be supplanted by pandas dataframe shouldn't it? It is a standardized spreadsheet reader/writer.
Sincerely, Philip
- Assignee changed from Philip Baldwin to Neil Voss
I am not a big fan of the pandas software, frankly I have never used it. I thought it was for visualization of data rather than input/output. If you think it would be better or faster go ahead, but I was fine with how amber did the starFile.py
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