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Feature #4905

open

Create a minimal recon uploader to help keep track of reconstructions done outside of Appion.

Added by Neil Voss over 7 years ago. Updated about 7 years ago.

Status:
Assigned
Priority:
Normal
Assignee:
Neil Voss
Category:
-
Target version:
-
Start date:
04/14/2017
Due date:
% Done:

0%

Estimated time:
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 #1

Updated by Yong Zi Tan over 7 years ago

Dear Neil,

Do you mind if I take a stab at this, specifically with a Relion 3D refinement result? Thanks.

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 #2

Updated by Yong Zi Tan over 7 years ago

To have:
Resolution
Number of particles
Number of iterations
Folder
NGL viewer to look at the volume

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 #3

Updated by Gabriel Lander about 7 years ago

I had to fix the "recenter" part of the code - the recentering wasn't actually running when the option was set because the syntax was wrong.
More importantly - the Origin_x & y are in pixels relative to the extracted particles, so they have to be scaled relative to the original micrograph. Also, these values have to be subtracted, not added, from the original particle coordinates. I've implemented the recentering the same way that Sjors does it in his preprocessing.cpp code. Should be recentering properly now.
I also removed the requirement for X11 forwarding for the matplotlib stuff.

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