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Feature #6041

open

Black stripe monitor added

Added by William Rice about 6 years ago. Updated over 5 years ago.

Status:
Assigned
Priority:
Normal
Assignee:
Category:
-
Start date:
09/22/2018
Due date:
% Done:

0%

Estimated time:
Deliverable:

Description

Added node to check for black stripes in K2 images. Checked to work on several counted and super res images. Checks orientation. Also gives error if size is not standard K2 size


Related issues 1 (0 open1 closed)

Has duplicate Leginon - Bug #5961: K2 image shows stripes after acquiring hardware dark automaticallyDuplicate08/23/2018

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Actions #1

Updated by Anchi Cheng over 5 years ago

  • Status changed from New to Assigned
  • Assignee set to William Rice
  • Target version set to Appion/Leginon 3.4

Bill,

If you are ready, I am going to close this as done. However, I am wondering what the pause settings do.

Actions #2

Updated by William Rice over 5 years ago

Pause settings were not implemented yet, I just put a spacer for a button. Plan was to add a counter to it and pause after 3 black stripe images, if pause was set. We occasionally see rogue black stripes where we get a stripe but the next image is OK, and I would not want it to pause there. Because both this and the ice thickness send return messages back to exposure, the pause I was thinking of implementing would not work. Your new messaging feature should allow it to work.

There is a bug in it, in that it will crash if it is sent a binned image smaller than the counted image size. It only crashes the node, not leginon. I already have a fix for this and will update tonight or tomorrow.

Actions #3

Updated by Anchi Cheng almost 5 years ago

  • Has duplicate Bug #5961: K2 image shows stripes after acquiring hardware dark automatically added
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