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Bug #608

closed

Problem with running ACE

Added by Anna-Clare Milazzo over 14 years ago. Updated over 14 years ago.

Status:
Closed
Priority:
Normal
Assignee:
-
Category:
-
Target version:
Start date:
06/02/2010
Due date:
% Done:

0%

Estimated time:
Affected Version:
Show in known bugs:
Workaround:

Description

I was able to do one ACE run on a set of images, but when I tried it a second and third time I got the following error:

+---------+---------+--------+-------+-------+---------+ 
| Nominal | Defocus | PerErr | Conf1 | Conf2 | TotConf | 
| 2.000 | -1000000.00 | 500001.000 | -1.00 | -1.00 
| 0.000 | 
+---------+---------+--------+-------+-------+---------+ 
 ==== Committing data to database ====  
Connecting to matlab ... 
Prev best: 'acerun1', conf=0.330, defocus=-4.62 microns 
Traceback (most recent call last): 
File "/opt/appion/bin/pyace.py", line 162, in ? 
imgLoop.run() 
File "/var/tmp/appion-2.0-6_rc1-root/opt/appion/appionlib/appionLoop2.py", line 77, in run 
File "/var/tmp/appion-2.0-6_rc1-root/opt/appion/appionlib/appionLoop2.py", line 123, in loopCommitToDatabase 

File "/opt/appion/bin/pyace.py", line 112, in commitToDatabase 
apCtf.commitCtfValueToDatabase(imgdata, self.matlab, self.ctfvalue, self.params) 
File "/var/tmp/appion-2.0-6_rc1-root/opt/appion/appionlib/apCtf.py", line 44, in commitCtfValueToDatabase 

File "/usr/lib64/python2.4/shutil.py", line 47, in copyfile 
fsrc = open(src, 'rb') 
IOError: [Errno 2] No such file or directory: '/ami/exdata/appion/10may26f/ctf/acerun3/temp/im1.png' 
Actions #1

Updated by Neil Voss over 14 years ago

  • Target version set to Appion/Leginon 2.0.1

This occurs because the ACE run failed to create an image and then the program tried to copy a non-existant file.

Actions #2

Updated by Neil Voss over 14 years ago

  • Status changed from New to In Code Review
  • Assignee set to Amber Herold
  • Priority changed from Normal to Urgent

Anna-Clare needs this to run.

Actions #3

Updated by Amber Herold over 14 years ago

  • Status changed from In Code Review to Merge
  • Assignee changed from Amber Herold to Neil Voss

Looks good Neil. Please commit it to the branch and then assign to Anna-Clare to test just to make sure it makes it in to the release. It looks pretty low risk.

Actions #4

Updated by Neil Voss over 14 years ago

  • Status changed from Merge to Closed
  • Assignee deleted (Neil Voss)
  • Priority changed from Urgent to Normal
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