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Bug #608
closedProblem with running ACE
Start date:
06/02/2010
Due date:
% Done:
0%
Estimated time:
Affected Version:
Show in known bugs:
Workaround:
Description
I was able to do one ACE run on a set of images, but when I tried it a second and third time I got the following error:
+---------+---------+--------+-------+-------+---------+ | Nominal | Defocus | PerErr | Conf1 | Conf2 | TotConf | | 2.000 | -1000000.00 | 500001.000 | -1.00 | -1.00 | 0.000 | +---------+---------+--------+-------+-------+---------+ ==== Committing data to database ==== Connecting to matlab ... Prev best: 'acerun1', conf=0.330, defocus=-4.62 microns Traceback (most recent call last): File "/opt/appion/bin/pyace.py", line 162, in ? imgLoop.run() File "/var/tmp/appion-2.0-6_rc1-root/opt/appion/appionlib/appionLoop2.py", line 77, in run File "/var/tmp/appion-2.0-6_rc1-root/opt/appion/appionlib/appionLoop2.py", line 123, in loopCommitToDatabase File "/opt/appion/bin/pyace.py", line 112, in commitToDatabase apCtf.commitCtfValueToDatabase(imgdata, self.matlab, self.ctfvalue, self.params) File "/var/tmp/appion-2.0-6_rc1-root/opt/appion/appionlib/apCtf.py", line 44, in commitCtfValueToDatabase File "/usr/lib64/python2.4/shutil.py", line 47, in copyfile fsrc = open(src, 'rb') IOError: [Errno 2] No such file or directory: '/ami/exdata/appion/10may26f/ctf/acerun3/temp/im1.png'
Updated by Neil Voss over 14 years ago
- Target version set to Appion/Leginon 2.0.1
This occurs because the ACE run failed to create an image and then the program tried to copy a non-existant file.
Updated by Neil Voss over 14 years ago
- Status changed from New to In Code Review
- Assignee set to Amber Herold
- Priority changed from Normal to Urgent
Anna-Clare needs this to run.
Updated by Amber Herold over 14 years ago
- Status changed from In Code Review to Merge
- Assignee changed from Amber Herold to Neil Voss
Looks good Neil. Please commit it to the branch and then assign to Anna-Clare to test just to make sure it makes it in to the release. It looks pretty low risk.
Updated by Neil Voss over 14 years ago
- Status changed from Merge to Closed
- Assignee deleted (
Neil Voss) - Priority changed from Urgent to Normal
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