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Bug #6459

closed

tilted app focus node complain about binding to align_zlp

Added by Laura Yen almost 6 years ago. Updated over 5 years ago.

Status:
Won't Fix or Won't Do
Priority:
Normal
Assignee:
Category:
-
Target version:
-
Start date:
12/19/2018
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.4
Show in known bugs:
No
Workaround:

Description

Session = 18dec19a, Krios3, User = Israel Fernandez, Institution = COLU.

During tilted data collection, leginon complains in the focus node "Error = process target failed: alignzerolosspeakpublishevent drom K1n focus not bound". This is strange because the alignzerolosspublishevent should be bound to exposure node, not the focus node. To fix, we went ahead and bound alignzerolosspeakpublishevent to the k1n focus node, but then we got errors with the align zlp: it would try to align the zlp on the stage position where it was focusing (on the gold substrate of the grid, and not the vacuum reference target). This messed up the position of the slip, etc.

To fix, Ed re-created the K1n_focus node and bound things similarly to the Krios2_tilted app. A permanent fix is required. Please review this application.

Actions #1

Updated by Anchi Cheng almost 6 years ago

  • Assignee set to Laura Yen

Please use instruction in Use_the_Application_Editor_to_create_Leginon_applications to edit the application yourself.

You can do it !

Actions #2

Updated by Anchi Cheng over 5 years ago

  • Tracker changed from Bug to Task
  • Project changed from Leginon to 138
  • Status changed from New to Closed
  • Affected Version deleted (Appion/Leginon 3.4)
  • Show in known bugs deleted (No)
Actions #3

Updated by Anchi Cheng over 5 years ago

  • Tracker changed from Task to Bug
  • Project changed from 138 to Leginon
  • Subject changed from krios3 tilted app requesting focus node binding to align_zlp to tilted app focus node complain about binding to align_zlp
  • Status changed from Closed to Won't Fix or Won't Do
  • Affected Version set to Appion/Leginon 3.4
  • Show in known bugs set to No

I miss-read the issue. Now I see the bug but this is not possible to debug unless caught in the act. Leave as won't fix now.

Actions #4

Updated by Anchi Cheng over 5 years ago

  • Assignee changed from Laura Yen to Anchi Cheng
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