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Bug #656

closed

Add MRC2ANY to config.php wizard

Added by Jim Pulokas over 14 years ago. Updated over 14 years ago.

Status:
Closed
Priority:
High
Assignee:
Amber Herold
Category:
-
Target version:
Appion/Leginon 2.1.0
Start date:
06/14/2010
Due date:
% Done:

100%

Estimated time:
Affected Version:
Appion/Leginon 2.0.1
Show in known bugs:
No
Workaround:

Description

I updated the documentation to explain that pyami needs to be installed on the web server for MRC to JPEG conversion:
http://emg.nysbc.org/projects/appion/wiki/Install_the_Web_Interface.
Also a small comment change to config.php.template.
Eric is going to update the wizard to make sure the admin configures the location of the mrc2any script in config.php.

Related issues 1 (0 open — 1 closed)

Related to Appion - Feature #569: User inputs violation checking in WizardClosedAmber Herold05/26/2010

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 #1

Updated by Amber Herold over 14 years ago

  • Target version set to Appion/Leginon 2.1.0
  • Affected Version set to Appion/Leginon 2.0.1
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 #2

Updated by Eric Hou over 14 years ago

  • Assignee changed from Eric Hou to Jim Pulokas
  • Priority changed from Normal to High
  • % Done changed from 0 to 70
  • Show in known bugs set to No

Jim, I added the GUI interface for mrc2any option in the wizard.
By the way, I think it still missing some setups in order to make this to work. Because it does not work on cronus3 now. the mrc2any python script has error, and I think it is complaining about can not find some python modules.

Thanks.

Eric

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 #3

Updated by Jim Pulokas over 14 years ago

On cronus3, the problem is that myami python prerequisites (PIL, numpy, etc.) are not installed or not accessible to the apache user due to a python path problem (adding Christopher to watchers here). I guess we just need to update the doc to say that you also need to install the prerequisites of pyami and make sure web user can access them. We could also make that a part of installation for each package to tell you if the prerequisites are not installed.
I also need to fix mrc2any. Currently it is catching the exception that tells you what is really going wrong (in this case, PIL is missing).

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 #4

Updated by Jim Pulokas over 14 years ago

  • Assignee changed from Jim Pulokas to Eric Hou

documentation now instructs you to install supporting packages. mrc2any fixed to report a more useful exception. Eric would like to add a test button for mrc2any to the wizard.

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 #5

Updated by Eric Hou over 14 years ago

fixed in r14463
see detail in issue 569

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 #6

Updated by Eric Hou over 14 years ago

  • Status changed from Assigned to In Test
  • Assignee changed from Eric Hou to Amber Herold
  • % Done changed from 70 to 100

To test, please test all the web servers we have.

If any server is not working, assign it to Christopher.

Thanks.

Eric

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 #7

Updated by Amber Herold over 14 years ago

  • Assignee changed from Amber Herold to Eric Hou

Eric, What specifically do I need to test? Just download a jpeg/tiff image from the image viewer, or is there more?

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 #8

Updated by Eric Hou over 14 years ago

  • Assignee changed from Eric Hou to Amber Herold

Yes, that's all you need to test. And also open the image you download from image viewer, make sure they are correct.

Thanks.

Eric

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 #9

Updated by Amber Herold over 14 years ago

  • Status changed from In Test to Closed

Looks good :)

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