Bug #656
closed
- Target version set to Appion/Leginon 2.1.0
- Affected Version set to Appion/Leginon 2.0.1
- Assignee changed from Eric Hou to Jim Pulokas
- Priority changed from Normal to High
- % Done changed from 0 to 70
- Show in known bugs set to No
Jim, I added the GUI interface for mrc2any option in the wizard.
By the way, I think it still missing some setups in order to make this to work. Because it does not work on cronus3 now. the mrc2any python script has error, and I think it is complaining about can not find some python modules.
Thanks.
Eric
On cronus3, the problem is that myami python prerequisites (PIL, numpy, etc.) are not installed or not accessible to the apache user due to a python path problem (adding Christopher to watchers here). I guess we just need to update the doc to say that you also need to install the prerequisites of pyami and make sure web user can access them. We could also make that a part of installation for each package to tell you if the prerequisites are not installed.
I also need to fix mrc2any. Currently it is catching the exception that tells you what is really going wrong (in this case, PIL is missing).
- Assignee changed from Jim Pulokas to Eric Hou
documentation now instructs you to install supporting packages. mrc2any fixed to report a more useful exception. Eric would like to add a test button for mrc2any to the wizard.
fixed in r14463
see detail in issue 569
- Status changed from Assigned to In Test
- Assignee changed from Eric Hou to Amber Herold
- % Done changed from 70 to 100
To test, please test all the web servers we have.
If any server is not working, assign it to Christopher.
Thanks.
Eric
- Assignee changed from Amber Herold to Eric Hou
Eric, What specifically do I need to test? Just download a jpeg/tiff image from the image viewer, or is there more?
- Assignee changed from Eric Hou to Amber Herold
Yes, that's all you need to test. And also open the image you download from image viewer, make sure they are correct.
Thanks.
Eric
- Status changed from In Test to Closed
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