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Feature #6715
closedutility to convert tia raw data series to other formats
Status:
Closed
Priority:
Normal
Assignee:
Category:
-
Target version:
Start date:
02/04/2019
Due date:
% Done:
0%
Estimated time:
Deliverable:
Description
For electron diffraction processing and appion upload
Updated by Anchi Cheng over 5 years ago
- Subject changed from utility to convert tia raw data series to smv files to utility to convert tia raw data series to other formats
- Description updated (diff)
Updated by Anchi Cheng over 5 years ago
- Status changed from Assigned to Closed
- Target version set to Appion/Leginon 3.4
works.
Updated by Anchi Cheng over 5 years ago
Usage:
Typically run in the directory that contains the *_???.bin folder where ??? is a %03d or %02d format integer.
Requires knowledge of where pyami is installed or you should copy the python script to a shell accessible directory yourself.
python /path_to_pyami/tiaraw2mrc.py
You should get the below lines for you to enter file prefix desired.
This converts a series of TIA raw output *.bin to mrc format Enter bin file prefix prior to _001.bin, for example: Enter mrc file prefix:
tiaraw2smv.py is similar but with one addition input
Data offset value (default=200 is added to the input value):
smv is unsigned while tiaraw is signed. Therefore this offset is needed if you want noise statistics to be correct.
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