Feature #6715
closed
utility to convert tia raw data series to other formats
Added by Anchi Cheng almost 6 years ago.
Updated over 5 years ago.
Description
For electron diffraction processing and appion upload
- Subject changed from utility to convert tia raw data series to smv files to utility to convert tia raw data series to other formats
- Description updated (diff)
- Status changed from Assigned to Closed
- Target version set to Appion/Leginon 3.4
Usage:
Typically run in the directory that contains the *_???.bin folder where ??? is a %03d or %02d format integer.
Requires knowledge of where pyami is installed or you should copy the python script to a shell accessible directory yourself.
python /path_to_pyami/tiaraw2mrc.py
You should get the below lines for you to enter file prefix desired.
This converts a series of TIA raw output *.bin to mrc format
Enter bin file prefix prior to _001.bin, for example:
Enter mrc file prefix:
tiaraw2smv.py is similar but with one addition input
Data offset value (default=200 is added to the input value):
smv is unsigned while tiaraw is signed. Therefore this offset is needed if you want noise statistics to be correct.
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