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Bug #729
closedunqualified names used for shell commands.
Status:
Closed
Priority:
Urgent
Assignee:
Christopher Irving
Category:
-
Target version:
Start date:
07/12/2010
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 2.0.1
Show in known bugs:
No
Workaround:
Description
There are several places in the appion where the python subprocess function is used to call shell commands like 'cp'. These calls are not qualified (they don't use the absolute path to the program like /bin/cp). This poses a potential problem if the command doesn't behave as expected. For instance if cp is aliased to 'cp -i' then the cp command will wait indefinitely for user input if the file already exists. These commands should all use an absolute path to the command such as '/bin/cp'
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