Bug #874
open
If a PBS job file is modified on the remote cluster, uploadrecon will upload the wrong job parameters
Added by Anchi Cheng about 14 years ago.
Updated about 14 years ago.
Affected Version:
Appion/Leginon 2.0.2
Description
The job file on the data outdir is saved before job submission. If the job file is modified at the remote cluster as often happens when cluster error occurs, the modification is not transferred back to data outdir locally. The modification
is not necessary if the cluster job works all the time but it does not happens during development.
- Status changed from Assigned to In Code Review
- Assignee changed from Anchi Cheng to Eric Hou
- % Done changed from 0 to 100
Added the transferring command in r14782. The real change need to be copied to the remote_cluster.php such as garibaldi.php at NRAMM. Also not sure if it needs to be modified on default_cluster,php_template instead.
Testing (only matters on garibaldi or other cluster that can not run the job from data outdir):
1. make sure you update your garibaldi.php
2. create a refinement job with emanJobGen.php. Submit the job to garibaldi.
3. abort the job.
4. log into garibaldi and change some print statement in the jobfile in its appion/10xxxxxx/recon/emanreconxx directory.
5. resubmit the job from garibaldi.
6. after the job is complete, check the job file in data outdir to see if it reflects the change.
Dmitry or Pick-Wei can test.
- Status changed from In Code Review to In Test
- Assignee changed from Eric Hou to Pick-Wei Lau
- Priority changed from Normal to High
Also available in: Atom
PDF