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Bug #8926

open

Bug fix: histogram for Aperture limited scattering

Added by William Rice over 4 years ago. Updated over 4 years ago.

Status:
New
Priority:
Normal
Assignee:
-
Category:
-
Target version:
-
Start date:
04/24/2020
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.4
Show in known bugs:
No
Workaround:

Bug is a display issue in the histogram. In general, numbers need t be divided by 3. The update fixes this bug.


Description

In Summary page, histogram for ALS vales is often off by a factor of 3, since it lists values for stacks, aligned stacks, and aligned+doseweieghted stacks.
This fix filters out data from aligned and aligend+doseweighted stacks, resulting in a correct graph.
Note that the list of files will also have only the original files, not the aligned files.

Actions #1

Updated by William Rice over 4 years ago

  • Tracker changed from Feature to Bug
  • Affected Version set to Appion/Leginon 3.4
  • Show in known bugs set to No
  • Workaround updated (diff)

Second update submitted. After updating my webserver at NYU, I realized that the extension .mrc is now included in the returned filename. This will now fix the duplicate issue in the histogram for the current web server. It assumes the filenames end in .mrc, probably a safe assumption for awhile.

Actions #2

Updated by William Rice over 4 years ago

Added fix to ZLP graph as well.
Added fix to holeice to als ice graph. Should make this graph faster to load.
Edited regex: filter out -td (topaz denoised) micrographs as well. Make .mrc optional as it is present in ALS filename data but not present in ZLP filename data. Should now be resilient to changes here.

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