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Bug #906
closedmanual tilt picker crashes after first image
Status:
Closed
Priority:
High
Assignee:
Category:
Python scripting
Target version:
Start date:
10/11/2010
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 2.0.2
Show in known bugs:
No
Workaround:
Description
manual tilt picker crashes after first image pair. You can transfer the coordinates of the picks from one image to the next but the images don't get "optimized". after clicking the forward button the viewer crashes. I've tested it on different machines and with different datasets, as well as different binning factors.
ERROR MESSAGE:
... 24 of 25 good (1 bad) particles; min worst error=4.598... writing peak JPEG: /ami/data07/appion/10jun25a/tiltalign/tiltrun9-ends/jpgs/10jun25a_c_00014gr_00017sq_v01_00002cs_v01_00002en_00.prtl.jpg
... writing peak JPEG: /ami/data07/appion/10jun25a/tiltalign/tiltrun9-ends/jpgs/10jun25a_c_00014gr_00017sq_v01_00002cs_v02_00002en_01.prtl.jpg ==== Committing data to database ====
... Final image assessment: keep (10jun25a_c_014gr_017sq_02cs_02en_00)
... Final image assessment: keep (10jun25a_c_014gr_017sq_02cs_02en_01)
Traceback (most recent call last):
File "/ami/sw/packages/myamitrunk/appion/bin/tiltaligner.py", line 386, in ?
imgLoop.run()
File "/ami/sw/packages/myamitrunk/appion/appionlib/appionLoop2.py", line 77, in run
self.loopCommitToDatabase(imgdata)
File "/ami/sw/packages/myamitrunk/appion/bin/tiltaligner.py", line 155, in loopCommitToDatabase
transdata = apTiltPair.insertTiltTransform(imgdata, tiltdata, self.tiltparams, self.params)
File "/ami/sw/packages/myamitrunk/appion/appionlib/apTilt/apTiltPair.py", line 181, in insertTiltTransform
apDisplay.printError("Key: "+key+" was not found in transformation data")
File "/ami/sw/packages/myamitrunk/appion/appionlib/apDisplay.py", line 56, in printError
raise Exception, colorString("\n * FATAL ERROR *\n"+text+"\n\a","red")
Exception:
- FATAL ERROR ***
Key: overlap was not found in transformation data
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