2010 Appion Developer Workshop¶

Setting up a development enviroment¶

Subversion¶

svn checkout http://emg.nysbc.org/svn/myami/trunk/ myami/

Sinedon.cfg¶

At AMI, you do not normally need a sinedon.cfg file, but if you have your own testing environment you will need one.

Web page¶

At AMI, put myamiweb into your ami_html directory and it will be available on both cronus3 and fly as http://cronus3.scripps.edu/~username/myamiweb/

You will need to run Eric's web setup wizard to get it working: http://cronus3.scripps.edu/~username/myamiweb/setup/

Your PYTHONPATH should contain both the myami folder and the myami/appion folder.

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Add a new option to a program¶

2010 ADW/Add a new option to a program

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Organization of the Python programs¶

2010 ADW/Organization of the Python programs

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Organization of the PHP programs¶

2010 ADW/Organization of the PHP programs

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Create a program from scratch¶

2010 ADW/Create a program from scratch

• Problem statement: I have program X that I want to put into the pipeline:
  • EMAN 2d alignment, refine2d.py or classalign2
  • Bsoft program, nothing really any good

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Create a program, database structure, and report pages from scratch (if time)¶

• 3D MSA?