Appion

h1. 2010 Appion Developer Workshop

h2. Setting up a development enviroment

h4. Subversion

<pre>

svn checkout http://emg.nysbc.org/svn/myami/trunk/ myami/

</pre>

h4. Sinedon.cfg

At AMI, you do not normally need a sinedon.cfg file, but if you have your own testing environment you will need one.

h4. Web page

At AMI, put myamiweb into your ami_html directory and it will be available on both cronus3 and fly as http://cronus3.scripps.edu/~username/myamiweb/

You will need to run Eric's web setup wizard to get it working: http://cronus3.scripps.edu/~username/myamiweb/setup/

Your PYTHONPATH should contain both the myami folder and the myami/appion folder.

______

h2. Add a new option to a program

[[2010 ADW/Add a new option to a program]]

______

h2. Organization of the Python programs

[[2010 ADW/Organization of the Python programs]]

______

h2. Organization of the PHP programs

[[2010 ADW/Organization of the PHP programs]]

______

h2. Create a program from scratch

* Problem statement: I have program X that I want to put into the pipeline:

** EMAN 2d alignment, "refine2d.py":http://blake.bcm.tmc.edu/eman/eman1/progs/refine2d.py.html or "classalign2":http://blake.bcm.tmc.edu/eman/eman1/progs/classalign2.html

** Bsoft program, nothing really any good

______

h2. Create a program, database structure, and report pages from scratch (if time)

* 3D MSA?