2010 Appion Developer Workshop » History » Revision 14
Revision 13 (Neil Voss, 06/09/2010 09:35 AM) → Revision 14/18 (Neil Voss, 06/10/2010 08:56 AM)
h1. 2010 Appion Developer Workshop
h2. Setting up a development enviroment
h4. Subversion
<pre>
svn checkout http://emg.nysbc.org/svn/myami/trunk/ myami/
</pre>
h4. Sinedon.cfg
At AMI, you do not normally need a sinedon.cfg file, but if you have your own testing environment you will need one.
h4. Web page
At AMI, put myamiweb into your ami_html directory and it will be available on both cronus3 and fly as http://cronus3.scripps.edu/~username/myamiweb/
You will need to run Eric's web setup wizard to get it working: http://cronus3.scripps.edu/~username/myamiweb/setup/
Your PYTHONPATH should contain both the myami folder and the myami/appion folder.
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h2. Add a new option to a program
[[2010 ADW/Add a new option to a program]]
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h2. Organization of the Python programs
[[2010 ADW/Organization of the Python programs]]
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h2. Organization of the PHP programs
[[2010 ADW/Organization of the PHP programs]]
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h2. Create a program from scratch
[[2010 ADW/Create a program from scratch]]
* Problem statement: I have program X that I want to put into the pipeline:
** EMAN 2d alignment, "refine2d.py":http://blake.bcm.tmc.edu/eman/eman1/progs/refine2d.py.html or "classalign2":http://blake.bcm.tmc.edu/eman/eman1/progs/classalign2.html
** Bsoft program, nothing really any good
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h2. Create a program, database structure, and report pages from scratch (if time)
* 3D MSA?