Appion Processing » History » Revision 37
Revision 36 (Anke Mulder, 06/14/2010 12:15 PM) → Revision 37/69 (Anke Mulder, 06/14/2010 12:16 PM)
h1. Appion Processing ## [[Terminology]] ## [[Common Workflow]] ### [[Step by Step Guide]] ### [[Quality Assessment]] ## [[Processing Cluster Login]] ## [[Particle Selection]] ### [[Template Picking]] ### [[Dog Picking]] ### [[Manual Picking]] ### [[Repeat from other session]] ### [[Random Conical Tilt Picking]] **** [[Align and Edit Tilt Pairs]] **** [[Auto Align Tilt Pairs]] ## [[CTF Estimation]] ### [[Ace Estimation]] ### [[Ace 2 Estimation]] ### [[CtfFind Estimation]] ### [[Repeat from other session]] ## [[Stacks]] ### [[Stack creation]] ### [[more stack tools]] #### [[Combine Stacks]] #### [[View Stacks]] ***** [[Filter by MeanSTDev]] ***** [[Center Particles]] ***** [[Sort Junk]] ***** [[Create Substack]] #### [[Alignment SubStacks]] #### [[ Jumpers SubStack]] #### [[Convert Stack into Particle Picks]] ## [[Particle Alignment]] ### [[Run Alignment]] **** [[Xmipp Maximum Likelihood Alignment]] **** [[Spider Reference-free Alignment]] **** [[Spider Reference-based Alignment]] **** [[Ed's Iteration Alignment]] **** [[Xmipp Reference-based Maximum Likelihood Alignment]] ### [[Run Feature Analysis]] **** [[Spider Coran Classification]] **** [[Xmipp Kerden Self-Organizing Map]] **** [[Xmipp Rotational Kerden Self-Organizing Map]] ### [[Run Particle Clustering]] ## [[Ab Initio Reconstruction]] ### [[RCT Volume]] ### [[OTR Volume]] ### [[EMAN Common Lines]] ### [[IMAGIC Angular Reconstitution]] ## [[Refine Reconstruction]] ### [[EMAN Refinement]] ### [[Frealign Refinement]] ### [[SPIDER Refinement]] ### [[IMAGIC Refinement]] ## [[Tomography]] ### [[Align tilt series]] ### [[Create full tomogram]] ### [[Upload tomogram]] ### [[Create tomogram subvolume]] ### [[Average subvolumes]] ## [[Import Tools]] ### [[PDB to Model]] ### [[EMDB to Model]] ### [[Upload Particles]] ### [[Upload Template]] ### [[Upload Model]] ### [[Upload More Images]] ### [[Upload Stack]] ## [[Image Assessment]] ### [[Web Img Assessment]] ### [[Multi Img Assessment]] ### [[Run Image Rejector]] ## [[Region Mask Creation]] ### [[Manual Masking]] ## [[Synthetic Data]] ### [[Synthetic Dataset Creation]] ## [[test page]] !http://emg.nysbc.org/attachments/282/Picture_83.png! !http://emg.nysbc.org/attachments/277/Picture_81.png! ______ [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] ______