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Appion Processing » History » Revision 37

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Anke Mulder, 06/14/2010 12:16 PM


Appion Processing

  1. Terminology
  2. Common Workflow
    1. Step by Step Guide
    2. Quality Assessment
  3. Processing Cluster Login
  4. Particle Selection
    1. Template Picking
    2. Dog Picking
    3. Manual Picking
    4. Repeat from other session
    5. Random Conical Tilt Picking
  5. CTF Estimation
    1. Ace Estimation
    2. Ace 2 Estimation
    3. CtfFind Estimation
    4. Repeat from other session
  6. Stacks
    1. Stack creation
    2. more stack tools
      1. Combine Stacks
      2. View Stacks
      3. Alignment SubStacks
      4. Jumpers SubStack
      5. Convert Stack into Particle Picks
  7. Particle Alignment
    1. Run Alignment
    2. Run Feature Analysis
    3. Run Particle Clustering
  8. Ab Initio Reconstruction
    1. RCT Volume
    2. OTR Volume
    3. EMAN Common Lines
    4. IMAGIC Angular Reconstitution
  9. Refine Reconstruction
    1. EMAN Refinement
    2. Frealign Refinement
    3. SPIDER Refinement
    4. IMAGIC Refinement
  10. Tomography
    1. Align tilt series
    2. Create full tomogram
    3. Upload tomogram
    4. Create tomogram subvolume
    5. Average subvolumes
  11. Import Tools
    1. PDB to Model
    2. EMDB to Model
    3. Upload Particles
    4. Upload Template
    5. Upload Model
    6. Upload More Images
    7. Upload Stack
  12. Image Assessment
    1. Web Img Assessment
    2. Multi Img Assessment
    3. Run Image Rejector
  13. Region Mask Creation
    1. Manual Masking
  14. Synthetic Data
    1. Synthetic Dataset Creation
  1. test page



< Appion and Leginon Database Tools


Updated by Anke Mulder over 14 years ago · 37 revisions