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Appion config advanced » History » Revision 2

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Amber Herold, 06/04/2012 12:56 PM


  1. Enable the processing plug-in by uncommenting out the following line in the file`myamiweb/config.php`
    addplugin("processing");
    

     
  2. IMAGIC and Other features:
    // Check if IMAGIC is installed and running, otherwise hide all functions
    define('HIDE_IMAGIC', false);
    
    // hide processing tools still under development.
    define('HIDE_FEATURE', true);
    

     
  3. Add processing host information
     
    Appion version 2.2 and later:
    The following code should be added and modified for each processing host available.
    $PROCESSING_HOSTS[] = array(
    'host' => 'LOCAL_CLUSTER_HEADNODE.INSTITUTE.EDU', // for a single computer installation, this can be 'localhost'    
    'nproc' => 32,  // number of processors available on the host, not used
    'nodesdef' => '4', // default number of nodes used by a refinement job
    'nodesmax' => '280', // maximum number of nodes a user may request for a refinement job
    'ppndef' => '32', // default number of processors per node used for a refinement job
    'ppnmax' => '32', // maximum number of processors per node a user may request for a refinement job
    'reconpn' => '16', // recons per node, not used 
    'walltimedef' => '48', // default wall time in hours that a job is allowed to run
    'walltimemax' => '240', // maximum hours in wall time a user may request for a job
    'cputimedef' => '1536', // default cpu time in hours a job is allowed to run (wall time x number of cpu's) 
    'cputimemax' => '10000', // maximum cpu time in hours a user may request for a job
    'memorymax' => '', // the maximum memory a job may use
    'appionbin' => 'bin/', // the path to the myami/appion/bin directory on this host
    'appionlibdir' => 'appion/', // the path to the myami/appion/appionlib directory on this host
    'baseoutdir' => 'appion', // the directory that processing output should be stored in
    'localhelperhost' => '', // a machine that has access to both the web server and the processing host file systems to copy data between the systems
    'dirsep' => '/', // the directory separator used by this host
    'wrapperpath' => '', // advanced option that enables more than one Appion installation on a single machine, contact us for info 
    'loginmethod' => 'SHAREDKEY', // Appion currently supports 'SHAREDKEY' or 'USERPASSWORD' 
    'loginusername' => '', // if this is not set, Appion uses the username provided by the user in the Appion Processing GUI
    'passphrase' => '', // if this is not set, Appion uses the password provided by the user in the Appion Processing GUI
    'publickey' => 'rsa.pub', // set this if using 'SHAREDKEY'
    'privatekey' => 'rsa'      // set this if using 'SHAREDKEY'
    );
    

     
    Appion version 2.1 and prior:
    // --- Please enter your processing host information associate with -- //
    // --- Maximum number of the processing nodes                                    -- //
    // --- $PROCESSING_HOSTS[] = array('host' => 'host1.school.edu', 'nproc' => 4); -- //
    // --- $PROCESSING_HOSTS[] = array('host' => 'host2.school.edu', 'nproc' => 8); -- //
    
    // $PROCESSING_HOSTS[] = array('host' => '', 'nproc' => );
    

     
  4. Microscope spherical aberration constant
     
    Not needed for Appion version 2.2 and later. Version 2.1 and earlier only:
    $DEFAULTCS = "2.0";
    

Updated by Amber Herold over 12 years ago · 2 revisions