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Appion Home » Appion Manual » Appion User Guide » Appion and Leginon Database Tools » Image Viewers »

Common Features » History » Revision 14

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Amber Herold, 07/27/2010 10:05 AM

Image Viewer Overview

Anatomy of an Image Viewer

Primary Features
Name Description
Project Drop Down List Projects that you own or have been shared will appear in the list. Select one to view.
Session Drop Down List Sessions that belong to the currently selected Project will appear in the list. Select one to view.
Image List The images belonging to the currently selected Session will appear in the Image List. The selected image will appear in the Image View. The total number of images is displayed at the top of the list.
Image View The selected image will be displayed in the Image View. The Image View may be configured using the Image Tools controls located directly above the Image View.
Image Tools Includes many basic image manipulation features such as filtering and Fourier Transform. Read the Image Tools manual page for more information.

Image Viewer Screen Marked

 

Chose the right viewer for the job

Image Viewer applications available in Appion and Leginon web tools
Viewer Name Viewer Features
Image Viewer provides a single image pane
2 Way Viewer provides 2 image panes for viewing the same mrc file in different ways side by side
3 Way Viewer provides 3 image panes for viewing the same mrc file in different ways
Dual Viewer provides 2 image panes for viewing separate mrc images side by side

Features available with all viewers

From the header buttons

  1. View an aggregate summary of all the images in a session
  2. Launch the Appion Image processing application
  3. Launch a tool to create jpegs of all or many of the images in a session

From the Image Tools panel

  1. View the mrc images associated with Projects and Sessions
  2. Adjust image properties
  3. Mark images as hidden or exemplar
  4. View a sideshow of the images in a session
  5. Download individual images in mrc, tiff or jpeg format
  6. View a detailed image report including mrc header information and calibrations
  7. View the Fourier Transform of the image
  8. View ACE graphs
  9. View Particle Picks
  10. View Leginon MSI focus and acquisition targets
  11. Overlay a scale ruler

Image Tools >

Updated by Amber Herold over 14 years ago · 14 revisions