Common Features¶

The following 4 Image Viewer applications are available in Appion and Leginon web tools:

1. Image Viewer - provides a single image pane
2. 2 Way Viewer - provides 2 image panes for viewing the same mrc file in different ways side by side
3. 3 Way Viewer - provides 3 image panes for viewing the same mrc file in different ways
4. Dual Viewer - provides 2 image panes for viewing separate mrc images side by side

These viewers allow you to:

1. View an aggregate summary of all the images in a session
2. Launch the Appion Image processing application
3. Launch a tool to create jpegs of all or many of the images in a session
4. View the mrc images associated with Projects and Sessions
5. Adjust image properties
6. Mark images as hidden or exemplar
7. View a sideshow of the images in a session
8. Download individual images in mrc, tiff or jpeg format
9. View a detailed image report including mrc header information and calibrations
10. View the Fourier Transform of the image
11. View ACE graphs
12. View Particle Picks
13. View Leginon MSI focus and acquisition targets
14. Overlay a scale ruler

All Image viewers have the following features:

• Summary Button

  Display a summary of the currently selected session (experiment).

• Processing Button

  Launch the Appion Image Processing Pipeline.

• Make jpgs Button

  Create jpeg images of the currently selected session.

• Project Drop Down List

  Projects that you own or have been shared will appear in the list. Select one to view.

• Session Drop Down List

  Sessions that belong to the currently selected Project will appear in the list. Select one to view.

• Image List

  The images belonging to the currently selected Session will appear in the Image List. The selected image will appear in the Image View. The total number of images is displayed at the top of the list.

• Image View

  The selected image will be displayed in the Image View. The Image View may be configured using the Image Tools controls located directly above the Image View.

• Image Tools

  Includes many basic image manipulation features such as filtering and Fourier Transform. Read the Image Tools manual page for more information.

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Image Tools >

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