Configure leginoncfg Shared » History » Revision 11
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Amber Herold, 05/30/2012 11:56 AM
Configure leginon.cfg¶
For older versions of Appion and Leginon (pre-2.2), please use the following instructions:
Instructions for Appion and Leginon versions prior to 2.2
The order in which Leginon/Appion looks for leginon.cfg¶
- individual user home directory
- $PYTHONSITEPKG/leginon
Note: You can discover the $PYTHONSITEPKG path by starting python:python import sys sys.path
The first path to site-packages should hold the config file. - /etc/myami
configuration file template¶
A skeleton (default) configuration file is available:
$PYTHONSITEPKG/leginon/config/default.cfg
where $PYTHONSITEPKG is your python site-packages directory
Create a global leginon.cfg¶
Copy default.cfg to leginon.cfg.
sudo cp -v $PYTHONSITEPKG/leginon/config/default.cfg $PYTHONSITEPKG/leginon/config/leginon.cfg
Edit the newly created file and add a directory for images. Make sure you have permission to save files at this location. See File Server Setup Considerations for more details
You may put in a fake path on the microscope PC installation and ignore the error message at the start of Leginon if you follow our general rule of not saving any image directly from the microscope pc,
[Images] path: your_storage_disk_path/leginon
Updated by Amber Herold over 12 years ago · 11 revisions