Create Substack¶

Xmipp Sort by Statistics: This function sorts the particles in a stack by how closely they resemble the average. In general, this will sort the particles by how likely that they are junk. After sorting the particles a new stack will be created, you will then have to select at which point the junk starts and Apply junk cutoff. The second function, Apply junk cutoff will then create a third stack with no junk in it.

General Workflow:¶

1. Check run name and enter a description.
2. Make sure the "Commit to Database" box is checked if appropriate. Click "SortJunk" to submit to the cluster. Alternatively, click "Just Show Command" in order to copy and paste into a unix shell.

Notes, Comments, and Suggestions:¶

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