Appion

h1. EMAN Refinement

!http://emg.nysbc.org/attachments/259/Picture_48.png!

h2. General Workflow:

# Select the non-CTF corrected stack of particles to use for refinement from the dropdown menu.

# Select the non-CTF corrected stack of particles to use for the final reconstruction from the dropdown menu.

# Use the radio button to select the initial model to use for refinement. To upload an initial model click on the "Upload a new initial model" link or use one of the [[Import_tools|Import Tools]] in the Appion Sidebar.

# Click "Use this stack and model" to proceed to the next step.

!http://emg.nysbc.org/attachments/311/Picture_6.png!

# Check the Run Name and Output Directory.

h2. Notes, Comments, and Suggestions:

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[[Refine Reconstruction|< Refine Reconstruction]]|[[Quality_Assessment|Quality Assessment >]]

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