Install Appion Packages » History » Version 20
Anchi Cheng, 05/18/2010 07:46 PM
| 1 | 20 | Anchi Cheng | h1. Install Appion/Leginon Packages |
|---|---|---|---|
| 2 | 1 | Amber Herold | |
| 3 | h3. Install the package in _each folder_ with commands like these |
||
| 4 | |||
| 5 | |||
| 6 | <pre> |
||
| 7 | 9 | Neil Voss | cd /your_download_area/ |
| 8 | |||
| 9 | cd myami/leginon |
||
| 10 | 4 | Neil Voss | sudo python setup.py install |
| 11 | 1 | Amber Herold | |
| 12 | cd ../pyami |
||
| 13 | 4 | Neil Voss | sudo python setup.py install |
| 14 | 8 | Neil Voss | |
| 15 | 5 | Neil Voss | cd ../pyscope |
| 16 | 4 | Neil Voss | sudo python setup.py install |
| 17 | 8 | Neil Voss | |
| 18 | 1 | Amber Herold | cd ../sinedon |
| 19 | 4 | Neil Voss | sudo python setup.py install |
| 20 | 8 | Neil Voss | |
| 21 | cd ../imageviewer |
||
| 22 | sudo python setup.py install |
||
| 23 | |||
| 24 | cd ../appion |
||
| 25 | 10 | Neil Voss | sudo python setup.py install --install-scripts=/usr/local/bin |
| 26 | 8 | Neil Voss | |
| 27 | #binary packages |
||
| 28 | |||
| 29 | 4 | Neil Voss | cd ../numextension |
| 30 | 1 | Amber Herold | python setup.py build |
| 31 | 6 | Neil Voss | sudo python setup.py install |
| 32 | 8 | Neil Voss | |
| 33 | 4 | Neil Voss | cd ../libcv |
| 34 | 1 | Amber Herold | python setup.py build |
| 35 | sudo python setup.py install |
||
| 36 | 8 | Neil Voss | |
| 37 | 7 | Neil Voss | cd ../appion/radermacher |
| 38 | 6 | Neil Voss | python setup.py build |
| 39 | 4 | Neil Voss | sudo python setup.py install |
| 40 | 1 | Amber Herold | </pre> |
| 41 | |||
| 42 | h3. python-site-package-path: where the installed python packages went: |
||
| 43 | |||
| 44 | 19 | Amber Herold | Python installer put the packages you installed into its site-packages directory. This enables all users on the same computer to access them. The easiest way to discover where your installed package is loaded from by python is to load a module from the package using interactive python command lines like this: |
| 45 | 1 | Amber Herold | |
| 46 | 19 | Amber Herold | Start the python command line from shell: |
| 47 | 11 | Neil Voss | <pre>python</pre> |
| 48 | 1 | Amber Herold | |
| 49 | 16 | Neil Voss | Import a module from the package. Let's try sinedon here. All packages installed through the above setup.py script should go to the same place. |
| 50 | 11 | Neil Voss | <pre>python> import sinedon</pre> |
| 51 | 1 | Amber Herold | |
| 52 | |||
| 53 | 16 | Neil Voss | If the module is loaded successfully, call the module attribute __path__ (two underscrolls before "path" and two underscrolls after) will return the location of the module it is loaded from |
| 54 | 1 | Amber Herold | <pre> |
| 55 | 13 | Neil Voss | python> sinedon.__path__ |
| 56 | 1 | Amber Herold | ['/usr/lib/python2.4/site-packages/sinedon'] |
| 57 | </pre> |
||
| 58 | 14 | Neil Voss | |
| 59 | 16 | Neil Voss | In this case, /usr/lib/python2.4/site-packages/ is your python-site-package-path. If you go to that directory, you will find all the packages you just installed. |
| 60 | |||
| 61 | Save this value for use later, for bash: |
||
| 62 | 15 | Neil Voss | <pre> |
| 63 | 17 | Neil Voss | export PYTHONSITEPKG='/usr/lib/python2.4/site-packages' |
| 64 | 15 | Neil Voss | </pre> |
| 65 | or C shell |
||
| 66 | <pre> |
||
| 67 | 17 | Neil Voss | setenv PYTHONSITEPKG '/usr/lib/python2.4/site-packages' |
| 68 | 14 | Neil Voss | </pre> |
| 69 | 2 | Amber Herold | |
| 70 | ______ |
||
| 71 | |||
| 72 | [[Perform system check|< Perform system check]] | [[Configure leginon.cfg|Configure leginon.cfg >]] |
||
| 73 | 3 | Amber Herold | |
| 74 | ______ |