Appion

h1. Install EMAN

EMAN1 is a fundamental package used in Appion for general file conversion and image filtering.

h2. Download latest EMAN1 (not EMAN2) binaries (currently version 1.9):

# Go to the "EMAN webpage":http://blake.bcm.tmc.edu/eman/

# Click on @(download)@ next to @EMAN1@

# Scroll to Download 1.9

#* Note: For CentOS 6, you should download the latest nightly snapshot. (eman.daily.linuxcluster.tar.gz)

# Click on @Download 1.9@ link

# Select the appropriate package

#* we recommend using the @cluster@ version of EMAN1 

#* x86 for 32bit and x86_64 for 64bit machines

#* In this case, we would download the "eman-linux-x86_64-cluster-1.9.tar.gz"

h2. Install EMAN

# Go to download directory and unzip the tar file:

<pre>tar -zxvf eman-linux-x86_64-cluster-1.9.tar.gz</pre>

# Move the unzipped folder to a global location

<pre>sudo mv -v EMAN /usr/local/</pre>

# Run the EMAN installer, it sets up the EMAN python module (must be run from the EMAN directory)

<pre>

cd /usr/local/EMAN/

./eman-installer

</pre>

h2. Set enivromental variables

#* For @BASH@, create an eman.sh and add the following lines:

<pre>

export EMANDIR=/usr/local/EMAN

export PATH=${EMANDIR}/bin:${PATH}

export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${EMANDIR}/lib

export PYTHONPATH=${EMANDIR}/lib

</pre>

#* For @C@ shell, create an eman.csh and add the following lines:

<pre>

setenv EMANDIR /usr/local/EMAN

setenv PATH ${EMANDIR}/bin:${PATH}

setenv LD_LIBRARY_PATH ${EMANDIR}/lib

setenv PYTHONPATH ${EMANDIR}/lib

</pre>

#* And then add it to the global /etc/profile.d/ folder

<pre>

sudo cp -v eman.sh /etc/profile.d/eman.sh

sudo chmod 755 /etc/profile.d/eman.sh

- or -

sudo cp -v eman.csh /etc/profile.d/eman.csh

sudo chmod 755 /etc/profile.d/eman.csh

</pre>

bq. You may need to log out and log back in for these changes to take place.

h2. Test EMAN install

Run @proc2d@

<pre>proc2d help</pre>

Should popup a window displaying help for proc2d

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[[Install External Packages|< Install External Packages]] | [[Install EMAN2|Install EMAN2 >]]

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