Install EMAN » History » Revision 9
Revision 8 (Neil Voss, 05/12/2010 01:21 PM) → Revision 9/21 (Neil Voss, 05/12/2010 02:31 PM)
h1. Install EMAN
EMAN1 is a fundamental package used in appion for general file conversion and image filtering.
h2. Download latest EMAN1 (not EMAN2) binaries (currently version 1.9):
# Go to the "EMAN webpage":http://blake.bcm.tmc.edu/eman/
# Click on @(download)@ next to @EMAN1@
# Scroll to Download 1.9
# Click on @Download 1.9@ link
# Select the appropriate package
#* we recommend using the @cluster@ version of EMAN1
#* x86 for 32bit and x86_64 for 64bit machines
#* In this case, we would download the "eman-linux-x86_64-cluster-1.9.tar.gz"
# Go to download directory and unzip the tar file:
<pre>tar -zxvf eman-linux-x86_64-cluster-1.9.tar.gz</pre>
# Move the unzipped folder to a global location
<pre>sudo mv -v EMAN /usr/local/</pre>
# Run the EMAN installer
<pre>
cd /usr/local/EMAN/
./eman-installer
</pre>
# Set enivromental variables
#* For @BASH@, create an eman.sh and add the following lines:
<pre>
export EMANDIR=/usr/local/EMAN
export PATH=${EMANDIR}/bin:${PATH}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${EMANDIR}/lib
export PYTHONPATH=${EMANDIR}/lib
</pre>
#* For @C@ shell, create an eman.csh and add the following lines:
<pre>
setenv EMANDIR /usr/local/EMAN
setenv PATH ${EMANDIR}/bin:${PATH}
setenv LD_LIBRARY_PATH ${EMANDIR}/lib
setenv PYTHONPATH ${EMANDIR}/lib
</pre>
#* And then add it to the global /etc/profile.d/ folder
<pre>
sudo cp -v eman.sh /etc/profile.d/eman.sh
sudo chmod 755 /etc/profile.d/eman.sh
sudo cp -v eman.csh /etc/profile.d/eman.csh
sudo chmod 755 /etc/profile.d/eman.csh
</pre>
h2. Test EMAN install
Run @proc2d@
<pre>proc2d test.mrc test.mrc apix=2.0 addnoise=1.0 clip=64,64</pre>
Should create 64x64 image of noise, to view the file:
<pre>v2 test.mrc</pre>
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[[Install External Packages|< Install External Packages]] | [[Compile FindEM|Compile FindEM >]]
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