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Install Grigorieff lab software » History » Revision 16

Revision 15 (Amber Herold, 03/10/2011 01:12 PM) → Revision 16/18 (Sargis Dallakyan, 12/14/2017 10:24 AM)

h1. Install Grigorieff lab software 

 The Grigorieff lab at Brandies provides several individual programs that are used in Appion. See their "main software page":http://emlab.rose2.brandeis.edu/software to download their software 

 h2. Software used in Appion: 

 * "Frealign":http://emlab.rose2.brandeis.edu/frealign — Refinement of 3D reconstructions using single-particle images 
 * "CTFfind and CTFtilt":http://emlab.rose2.brandeis.edu/ctf — CTF estimation 
 ** *NOTE:* Once installed, you must rename ctffind ctffind3.exe to ctffind4 ctffind64.exe and ctftilt.exe to ctftilt64.exe or create symbolic links. Otherwise, you will receive an error that ctffind64.exe was not found during ctf estimation. 
 * "Signature":http://emlab.rose2.brandeis.edu/signature — Particle selection from micrographs 
 ** *NOTE:* Once installed, you must rename signature.exe to signature64.exe or create symbolic links. Otherwise, you will receive an error that signature64.exe was not found. 
 * "Rmeasure":http://emlab.rose2.brandeis.edu/rmeasure — Resolution measurement 

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 [[Install UCSF Chimera|< Install UCSF Chimera]] | [[Compile FindEM|Compile FindEM >]] 

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